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atul butte AI panel
Source:
UCSF
April 30, 2025

Pioneering bioinformatics expert and BCHSI founding director Atul Butte is elected to the American Academy of Arts and Sciences.

chart
Source:
JAMA Open Network
April 24, 2025

From Hong Lab - led by Chichi Chang, the team used natural language processing to evaluate symptoms experienced by >28k patients with cancer prior to emergency visits and hospitalizations.

travis zack
Source:
Health IT News
April 17, 2025

BCHSI affiliated faculty member Travis Zack shares how the implementation of AI in oncology workflows has led to measurable improvements in efficiency and decision making in oncology.

Atul Butte 10 Years at UCSF
Source:
UCSF BCHSI
April 1, 2025

Time flies! We are excited to announce that 2025 marks the year Atul Butte joined UCSF as faculty to lead the Bakar Computational Health Sciences Institute (BCHSI). Butte's contributions to the field of Precision Medicine, Computational Health, Data and Innovation extend beyond UCSF. A few years later, Butte became the first Chief Data Scientist for the University of California Health System (includes all five UC medical campuses).

BCHSI is an academic home for faculty, students, post-doctoral scholars, and staff at the University who employ computational methodologies and AI to address topics in health and wellness. BCHSI is home to 89 faculty representing each of the 4 schools at UCSF – Medicine, Nursing, Dentistry and Pharmacy. 

In collaboration with several key groups on campus, the BCHSI Research Computing team has developed a cutting-edge research platform – the UCSF Information Commons – that provides unparalleled access to all de-identified clinical data for exploratory and hypothesis-formation purposes without the need for an Institutional Review Board protocol. The Information Commons with over 500 users, has resulted in over 100 scientific publications and enabled numerous Real World Evidence projects in partnership with industry and academia. 

Thank you Dr. Butte for your incredible leadership and vision – you are an inspiration!

Matrix inversion and subset selection (MISS)
Source:
Nature Communications Biology
March 11, 2025

Justin Torok, Pedro Maia, Anand Chaitaili and Ashish Raj recent publish in Nature Communication Biology.

cell
Source:
Cell Reports
February 25, 2025

Latest publication in Cell by Grace Ramey, Marina Sirota, Alice Tang, et al. (Also related article here)

MRI
Source:
UCSF
February 7, 2025

Work featuring BCHSI affiliated faculty Reza Abbasi-Asl and Geoff Tison.

nejm ai
Source:
NEJM AI
January 23, 2025

Jean Feng,  Romain Pirracchio, et al publication.

jco
Source:
JCO Clinical Informatics
January 14, 2025

Julian Hong, Travis Zack, Atul Butte et al publish on the effectiveness of proprietary and open large language models (LLMs) in detecting disease presence, location, and treatment response in pancreatic cancer from radiology reports.

atul and madhumita portrait
Source:
BCHSI
January 10, 2025

Congratulations to Atul Butte and Madhumita Sushil on their recent grant award from the Chan Zuckerberg Initiative (Science in Society initiative).

The research will be on "Applying AI/LLMs to Characterize Rare Diseases and Address Diagnostic Challenges." The goal is to build LLM-based methodology to automatically identify and characterize rare disease patient cohorts from the UC-wide deidentified patient database of 8+ million patients, and reduce the diagnostic odyssey for rare diseases. The team plans to build generalizable strategies, but initiating a proof of concept with two diseases that UCSF is a center of excellence for: Hereditary Hemorrhagic Telangiectasia and cerebral cavernous malformations. They will also engage with patient foundations for both diseases to incorporate their views and disseminate findings back to them. Learn more here