- This event has passed.
Single Cell RNA-Seq Analysis
October 22, 2021 @ 10:00 am - 4:00 pm
This 4-session workshop will focus on the analysis of single-cell RNA-Seq data, starting from raw count matrices and progressing to network analysis of single-cell datasets. You’ll analyze data using R and Cytoscape.
Attendance at all four sessions is required. Register here!
October 22, 10am–12pm: Loading data, quality control, normalization, feature selection, dimensionality reduction
October 22, 2–4pm: Dimensionality reduction (continued), clustering, finding marker genes
October 25, 2-4pm: Advanced discussion on normalization, differential analysis, and batch-correction
October 26, 2-4pm: Network analysis of single-cell data, trajectory analysis, Q&A
- Familiarity with R and RStudio (e.g., reading in files, working with lists and dataframes)
- Some exposure to RNA-seq datasets
Advanced: This is an advanced workshop in the RNA-Seq Analysis series. Prior experience with RNA-Seq analysis is required. See introductory and intermediate workshops:
Visit the workshop site for more details and materials.