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You are here: Home / Archives for Angela

End-to-End Information Commons now on Wynton

IC Wynton
Source: Bakar Institute
December 20, 2021

Integrating De-Identified Medical Images, Notes, EHR Data and More

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Building the Brains of Precision Medicine

Source: UCSF
December 16, 2021

UCSF Magazine highlights SPOKE Knowledge Network

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AI Algorithm Matches Cardiologists’ Expertise, Explaining Its Decisions

Source: UCSF
August 26, 2021

Geoff Tison’s recent work highlights explainable AI for the cardiology clinc

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Fetal Heart Defect Detection Improved by Using Machine Learning

Source: UCSF
May 27, 2021

BCHSI Faculty, Rima Arnaout, develops AI-enhanced method to detect complex congenital heart disease in fetuses.

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Newly released updates to the Information Commons Environment

May 6, 2021 By Angela

The development team supporting our UCSF Information Commons Environment has been busy building and improving data assets, analysis tools, compute environments, and, of course, providing support and data science connections […]

Introducing the enhanced March of Dimes database for preterm birth research

Source: Bakar Institute
November 24, 2020

Marina Sirota helps establish a new and improved database for preterm birth research as part of the March of Dimes Prematurity Research Network

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UCSF Team Presents Ethical Framework for Effective COVID-19 Contact Tracing

Source: UCSF
October 19, 2020

Ida Sim publishes work on the use of mobile apps for contact tracing

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AI4All Summer Program

AI4ALL
Source: Grace Holmes
September 21, 2020

Bakar Institute sponsors a successful summer Program whose aim is to provide exposure to Artificial Intelligence & Health Data Sciences to high school students who are underrepresented in this field.

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BCHSI faculty develops COVIDseeker

Source: UCSF
September 15, 2020

NIH funds Yulin Hswen and colleagues to develop a system allowing study participants to donate their Google location history to promote a safer reopening.

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NSF Funds SPOKE Knowledge Network Phase Two

Source: UCSF Precision Medicine
September 3, 2020

This Phase Two award will expand SPOKE’s capacity to do what the human brain cannot – to integrate vast amounts of biomedical information, across many different data types, and to extract new knowledge from correlations and patterns that connect data points.

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Geoff Tison is developing a digital biomarker for diabetes

Source: UCSF
August 17, 2020

Bakar Institute faculty member is working to develop low-cost digital biomarkers for a leading cause of diabetes disease and mortality

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Bakar’s Response to COVID-19

BCHSI Work on COVID-19
Source: BAKAR INSTITUTE
APRIL 8, 2020

Bakar Institute’s special edition newsletter, responses to, & resources for COVID-19.

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Rima Arnaout’s work featured at GTC 2019

Source: NVIDIA
March 27, 2019

NVIDIA features Arnaout’s work using deep learning to analyze medical images in cardiology

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Atul Butte Inducted Into American Institute for Medical and Biological Engineering

Source: UCSF Precision Medicine
March 25, 2019

BCHSI’s Director has been inducted into the College of Fellows of the AIMBE in recognition of his contributions to creating a precision medicine roadmap with open access data

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Bandyopadhyay Lab uses multi-modal network model to improve cancer pharmacogenomics

Source: Cell Systems
November 7, 2018

A recent Cell Systems paper describes a new approach to the development of biomarkers for therapeutic responses, utilizing both patient and cell line data.

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Michael Keiser authors a cover piece for ACS Chemical Biology

Source: ACS Chem Biol
October 19, 2018

Keiser’s “In Focus” piece advocates for stronger experimental controls in research featuring machine learning methods

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Ted Goldstein talks cancer at TEDx

Source: TEDx
October 9, 2018

Ted explains how researchers are using data to target precision treatments for cancer

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Big Data Gives a Boost to Immunology Research and Potentially, Treatments

Source: KQED
October 25, 2018

Atul Butte helps to explain the potential of the 10,000 Immunomes Project

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Julia Adler-Milstein receives award from AMIA

Source: Bakar Institute
October 15, 2018

Bakar Institute faculty member honored by the American Medical Informatics Association

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Several Bakar Institute faculty among the selected CZ Biohub Intercampus Research Programs

Source: Chan Zuckerberg Biohub
September 26, 2018

Rima Arnaout, Atul Butte, Katie Pollard, and Jimmie Ye represent the Bakar Institute Faculty who are part of these extraordinary newly-awarded programs

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Automatic Hip Fracture Identification and Functional Classification with Deep Learning

September 25, 2018 By Angela

Justin D. Krogue MD, Kaiyang Cheng, Kevin Hwang MD, Eugene Ozhinsky PhD, Sharmila Majumdar PhD, Valentina Pedoia PhD Overview: Hip fractures represent an important cause of morbidity, with more than […]

Mapping the human brain to combat Alzheimer’s

Source: BIDS
July 16, 2018

The Berkeley Institute for Data Science highlights the work of one of our joint Bakar Institute Fellows

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Four Bakar Institute faculty members receive Catalyst Awards

Source: UCSF Catalyst Program
June 19, 2018

Rima Arnaout, Hani Goodarzi, Steven Altschuler & Lani Wu’s selection for Catalyst Awards recognizes their work as promising early-stage research with commercial potential.

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Combination Therapy May Revive Prospects for ‘Embattled’ Breast Cancer Drugs

Source: UCSF
June 25, 2018

Sourav Bandyopadhyay recent work published in Nature Chem Biol uncovers a new strategy for promising cancer treatment

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Andrej Sali elected to National Academy of Sciences

Andre Sali
Source: UCSF
May 2, 2018

ICHS Executive Committee member, Andrej Sali, receives the honor of membership into the esteemed NAS in recognition of his distinguished and continuing achievements in original research

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Sharmila Majumdar helps celebrate 100 years of women at Yale School of Medicine

Source: Yale School of Medicine
April 11, 2018

Yale School of Medicine is celebrating its 100th anniversary of women at the school, and Majumdar (Yale alum) will speak at a seminar in advance of a Symposium honoring the occasion.

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CZI Funds Draft Human Immune Census

Source: Chan Zuckerberg Initiative
April 19, 2018

Jimmie Ye receives CZI support to create new computational tools and benchmark datasets in support of the Human Cell Atlas

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Gene Mapping Lays Groundwork for Precision Chemotherapy

Source: UCSF
April 17, 2018

Sourav Bandyopadhyay works to map the links between genes and chemotherapy treatments

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UCSF Names First-Ever Chief Genomics Officer

Aleksandar Rajkovicpic
Source: UCSF
April 12, 2018

The newly appointed CGO, Aleksandar Rajkovic, will help UCSF move closer to realizing the vision of Precision Medicine

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Once-Mysterious ‘Atacama Skeleton’ Illuminates Genetics of Bone Disease

Source: UCSF
March 22, 2018

ICHS investigators help unravel the mystery of this rare specimen using genetic analysis

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AI is Quicker, More Effective Than Humans in Analyzing Heart Scans

Source: UCSF
March 21, 2018

Rima Arnaout’s team use deep learning to improve analysis of echocardiograms

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AI researchers embrace Bitcoin technology to share medical data

Source: Nature
March 9, 2018

Researchers like Dexter Hadley are using Blockchain to allow people to share their health records for research without losing control over them.

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Gladstone launches new Institute of Data Science and Biotechnology

Katherine S. Pollard
Source: Julie Langelier / Gladstone News
February 23, 2018

Katie Pollard is tapped to lead the new Institute at Gladstone where mathematicians, engineers, and biologists will work closely together

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Improved method for population-scale single cell sequencing

Source: Nature Biotechnology
December 12, 2017

A recent paper from the lab of Jimmie Ye describes a method to decrease cost and improve experimental design for single cell sequencing at the population scale.

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Foundation awards transformative software development at UCSF

Source: ICHS
December 12, 2017

ICHS collaborative teams will work to make clinical data accessible for massive computational research projects.

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New Data Resource for Preterm Birth Research

Source: ICHS
December 12, 2017

Marina Sirota and Atul Butte lead efforts to provide access to data from many studies of premature birth.

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2018 PMWC features several ICHS affiliates

Source: UCSF
December 15, 2017

The Precision Medicine World Conference (PMWC) in January 2018 will feature the latest in this rapidly evolving space

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Dexter Hadley Featured at Bloomberg’s The Year Ahead Summit

Source: ICHS
Nov 8, 2017

Dr. Hadley shares the stage with the President of Western Digital to talk about the their partnership and the future of data management at The Year Ahead Summit in Bloomberg headquarters.

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Big Data Shows How Cancer Interacts with Its Surroundings

Source: UCSF
October 20, 2017

ICHS investigative team uncovers new insights about the mechanisms of cancer dispersion

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Marina Sirota receives 2017 AMIA New Investigator Award

Marina Sirota
Source: ICHS
October 18, 2017

AMIA recognizes ICHS faculty member, Marina Sirota, with an early career honor.

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ICHS Director named Priscilla Chan and Mark Zuckerberg Distinguished Professor

Source: SF Chronicle
July 28, 2017

Philanthropists Chan and Zuckerberg donate $10M to support Atul Butte’s work and the ICHS

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Wynton is Here!

Source: ICHS
September 7, 2017

Learn about UCSF’s growing Research Computing Capability.

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Bin Chen uses Big Data analytics for drug discovery

Source: UCSF
July 13, 2017

ICHS Faculty, Bin Chen, publishes method of drug discovery using open-access datasets in the latest issue of Nature Communications

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Atul Butte receives 2017 Ilchun Molecular Medicine Award

Source: Genome Medicine Institute
July 12, 2017

ICHS Director is honored by Korea’s Genome Medicine Institute with the 9th annual Ilchun Molecular Medicine Award

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Artificial Intelligence Melanoma Detector Wins Cancer Center Impact Grant

Source: UCSF
June 20, 2017

Michael Keiser’s project team is awarded the Cancer Center ‘Shark Tank’ top prize!

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A Precision Medicine approach to study pre-term birth

Source: ICHS
June 2, 2017

UCSF Faculty Tippi MacKenzie (Pediatric Surgery) and Marina Sirota (ICHS) receive a Burroughs Wellcome Fund award to study preterm birth using precision medicine strategies

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NIH Director features Michael Fischbach

Source: NIH
May 18, 2017

Francis Collins writes in his NIH Director’s Blog about ICHS Faculty member Michael Fischbach’s work to identify the top 100 molecules in the human gut microbiome.

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ICHS Faculty, Dexter Hadley, explains how he uses big data to practice medicine

Source: Readwrite
May 3, 2017

In this article, Dexter gives his perspective on how technology and data science are enabling new ways to deliver healthcare.

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ICHS Welcomes Two New Members to the UCSF Dept. of Medicine: Julia Adler-Milstein & Udi Manber

Source: Robert M. Wachter, MD, Professor and Chair, UCSF Department of Medicine
May 2, 2017

Julia Adler-Milstein, PhD, a leading researcher in health informatics and policy, will join the ICHS faculty along with Udi Manber, PhD, a world leader in digital data analytics, who will serve as ICHS’s first Technical Advisor.

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How Computers are Searching for Drugs of the Future

Source: UCSF
April 11, 2017

This article on computational drug discovery features the work of two ICHS faculty, Brian Shoichet and Michael Keiser

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ICHS Faculty, Bin Chen, identifies promising drug candidate to treat liver cancer

Source: UCSF
March 30, 2017

Using computational methodologies to evaluate drug candidates, Chen and colleagues discover a promising new treatment.

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BIDS-ICHS Data Science Fellowship, UC Berkeley/UCSF

Source: Berkeley Institute for Data Science
March 8, 2017

ICHS has joined with UC Berkeley’s Institute for Data Science (BIDS) to offer a pair of fellowships, one from each campus, to strengthen the connection between the two campuses in the realm of data science. Graduate students and Postdocs may apply by April 1, 2017; and Fellowships begin in the Fall.

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ICHS Faculty, Shawn Douglas, receives Presidential Early Career Award

Source: UCSF
January 20, 2017

In recognition of his groundbreaking bio-nanotechnology work using DNA origami, Shawn Douglas, is one of 102 researchers recently named as a recipient of the Presidential Early Career Award for Scientists and Engineers (PECASE).

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ICHS Faculty, Steven Altshculer & Lani Wu, are developing new methods for drug discovery

Source: UCSF
January 4, 2017

Read more about how these long-time collaborators are using computational strategies to rapidly screen libraries of compounds for new therapeutic drugs

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ICHS Faculty, Michael Fischbach, recognized by NIH & HHMI

Source: ICHS
October 6, 2016

Michael’s innovative work on the human microbiome has earned him acknowledgement as an HHMI Faculty Scholar, and recipient of 2016 NIH Director’s Pioneer Award

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